rs51379742 SNP Detail

Summary

• ID
  rs51379742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54411788 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATAT TTACCACTAA TGGAGTGACT
  R
  GTGATGATTA GCATGATGTG ATGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss139557152	ENSMUSSNP1828424	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss324635220	CHEV_14_54794006	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51379742					SNP	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54411788 () rs orientation: forward

Symbol	Name	Function Class
A430107P09Rik	RIKEN cDNA A430107P09 gene	within coordinates
Rr492147	regulatory region 492147	720 bp distal
Tcra	T cell receptor alpha chain	within coordinates
Traj41	T cell receptor alpha joining 41	1940 bp upstream
Traj42	T cell receptor alpha joining 42	1442 bp upstream
Traj43	T cell receptor alpha joining 43	411 bp upstream
Traj44	T cell receptor alpha joining 44	581 bp downstream
Traj45	T cell receptor alpha joining 45	1441 bp downstream
Traj46	T cell receptor alpha joining 46	1933 bp downstream
Tssr125558	transcription start site region 125558	797 bp downstream
Tssr125559	transcription start site region 125559	777 bp downstream
Tssr125560	transcription start site region 125560	741 bp downstream
Tssr125561	transcription start site region 125561	727 bp downstream
Tssr125562	transcription start site region 125562	67 bp upstream
Tssr125563	transcription start site region 125563	269 bp upstream
Tssr125564	transcription start site region 125564	534 bp upstream
Tssr125565	transcription start site region 125565	623 bp upstream
Tssr125566	transcription start site region 125566	1643 bp upstream
Tssr125567	transcription start site region 125567	1877 bp upstream
Tssr125568	transcription start site region 125568	1896 bp upstream
Tssr125569	transcription start site region 125569	1922 bp upstream
Tssr125570	transcription start site region 125570	1940 bp upstream