rs51380449 SNP Detail

Summary

• ID
  rs51380449
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87193391 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCTTTGT GTTTAACCCA
  GTAGTTACAG CTCCCAACAG TCATAAAATG CACCTAATTT ATTAATTAGC TTCACAGTAA
  TTTATTAGTT TCCTATAGGA GCAGCCCTGT CAGTGTGTTT GCTTGCTCTT GAGTAAGATC
  CACTTGTGAC ACCTTCTATG CTAAGTTTCT GTTTGGTGAT ATAGAGAAGA TAAAACATCC
  Y
  TTCCAGCTAA AGATCAAGTA ACTCTGTGAG CTTGGGAAAT GGAATTGAAC CAAGCCTCAA
  GCCACCATCT GTATCATACA AAGTAAGGCC TAGAAAATAA TTCTCACAGG ATAACACCAG
  ACCTGTTGCT CAGAATCTGT GCCGCCATCT CCCGATACCC AAACTATCCT TACTCTATAG
  GAATCTTTTT CTTTGAAAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52451855	NES15431689	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51380449					SNP	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451855	NES15431689	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87193391 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	350 bp proximal
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	548 bp upstream
Pomt2	protein-O-mannosyltransferase 2	within coordinates
Rr403429	regulatory region 403429	363 bp upstream
Rr403430	regulatory region 403430	906 bp upstream
Rr470321	regulatory region 470321	58 bp proximal
Rr470322	regulatory region 470322	486 bp proximal
Rr470323	regulatory region 470323	611 bp proximal
Rr470324	regulatory region 470324	868 bp proximal
Rr470325	regulatory region 470325	1275 bp proximal
Tssr114506	transcription start site region 114506	532 bp upstream
Tssr114507	transcription start site region 114507	1086 bp upstream
Tssr114508	transcription start site region 114508	1168 bp upstream
Tssr114509	transcription start site region 114509	1353 bp upstream
Tssr117156	transcription start site region 117156	801 bp downstream
Tssr117157	transcription start site region 117157	867 bp downstream
Tssr117158	transcription start site region 117158	1266 bp downstream