rs51380924 SNP Detail

Summary

• ID
  rs51380924
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:16859364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGAA AGGGGCCAAA GAGATGGCTC
  C
  GTGGTTAAGA GCACTGACTG TTCTT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss137195985	ENSMUSSNP2688636	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss323920165	CHEV_12_16816169	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51380924					SNP	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:16859364 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4441	CpG island 4441	1231 bp proximal
E2f6	E2F transcription factor 6	1568 bp upstream
Rr463369	regulatory region 463369	946 bp distal
Rr463370	regulatory region 463370	1128 bp proximal
Rr463371	regulatory region 463371	1625 bp proximal
Tssr112858	transcription start site region 112858	1577 bp upstream
Tssr112859	transcription start site region 112859	1616 bp upstream