rs51381387 SNP Detail

Summary

• ID
  rs51381387
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:89815599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTAACAC ATGCTTATCA
  TCCAAGGATT GAGAAAAGGC ATGGAAACCA CAAGTTCTCC CTCCCCTCCC CTCCCCTCCC
  CTCCCTTCCC CTCCCCATTA TCTTTCTTTC TGTTCACCTA TCTGTCCTCC CTCTCTCCTT
  TCTGAAGAAA AGGTTCCATC ATAGTACAGG TATTGAATGA GAAAGTATGG ATGCAACAGA
  Y
  ACTTTAATTG CATTGTGTGG CAGTTTTGAT GGTTGTCTTA AATAGGCCAA AGGTGCCACC
  AATATGCATC ATGGTTTTCC CATTGCTGCC TGTCATCAGC TCTGGAAAAG GTGCTGAAGA
  ACATCCTGGC TTCCTTTAGT GCTCACAGTG CAGCTTATGA CAGAACCCAA CTTGGTGTAG
  TTTAAGTGGC TAGGCTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61031648	NES16093352	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs51381387					SNP	T	T	T	T	T	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61031648	NES16093352	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:89815599 () rs orientation: forward

Symbol	Name	Function Class
Picalm	phosphatidylinositol binding clathrin assembly protein	within coordinates
Tssr67723	transcription start site region 67723	843 bp downstream
Tssr67724	transcription start site region 67724	325 bp downstream
Tssr67725	transcription start site region 67725	283 bp downstream
Tssr67726	transcription start site region 67726	268 bp downstream
Tssr67727	transcription start site region 67727	204 bp downstream
Tssr67728	transcription start site region 67728	1910 bp upstream