rs51381997 SNP Detail

Summary

• ID
  rs51381997
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80142449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCCAGTAG ACTCACCTGA
  ATGTTAGCTG TTGGGATGAA TGTAGTCCAT TGGGTTTGCT AATCTAGGAT TCCTAAAACT
  ATGGAATCCA CCCGTAGTCT GGCCAAGAGT GGAGGAAGCT GTAGAAACCT TGACAATGTC
  AGGTATGACA AAAGGCTGGA AGTACTGCTT GCTCCCGTTT AGCCAGCCCA GACTGAAGCT
  R
  TTAGTTCTGG GCGCCTATTA GCTGGCAGAG AACGGCCTTC AGTTTCCCTA CCACTGGTGA
  TTGCTCACCT TGTACTGGGA ACTATCGGAT GCAAACTGAA CACAAGATGA GCAGCTTAGT
  TTTTGTGAAA CTTCCCTGCT AAGGGAGACA GGTACAACAA AGATGGGATG TAAAATGGCT
  GGCAGGCTGG GTGGAGGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss148216346	ENSMUSSNP301643	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51381997					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80142449 () rs orientation: forward

Symbol	Name	Function Class
Atf4	activating transcription factor 4	707 bp downstream
Cpgi7369	CpG island 7369	1895 bp distal
Rr505934	regulatory region 505934	384 bp distal
Tssr132204	transcription start site region 132204	1899 bp downstream
Tssr132205	transcription start site region 132205	1328 bp downstream
Tssr132206	transcription start site region 132206	1113 bp downstream
Tssr132207	transcription start site region 132207	1062 bp downstream
Tssr135434	transcription start site region 135434	707 bp upstream