rs51383890 SNP Detail

Summary

• ID
  rs51383890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3308823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACTGCCA ATAAAACTGC
  GGAGCCCTCA GAGGCTCATA GCCACCACAA ACACCACAAC AAACATGGGC AGGAGCATCT
  TGGCAGCAGT AAGCCTTCAG AGAATCAGCA ACCAGGGCCA TCAGAGACGA CTCTGCCTCC
  TTCAGGCTTG CACCACCACC ACAGGCATAG GGGCCAGCAC AGGCAGGGTC ACTTAGAGAG
  Y
  TGAGACACCA CAGCAAGTGA AGGCTTGCAC CTTTCACTTG CCCAGAGGAA GCTCTGACGA
  AGGGGGTGCA TCAACCAGCT CCTGTGTAAG TTGTCTAAGG AGTCCGAGGC AGCCCCCAGC
  AGCTGCTGCT GTCACTGCCG CCACCTCATA TTTGAGAAGT CAGGGTCTGC AATTGCTTGA
  CAGTGTGCGG AAAACCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62609623	NES17307816	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51383890					SNP	C	C	C	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62609623	NES17307816	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3308823 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	729 bp downstream
Rr498565	regulatory region 498565	1730 bp distal
Rr498566	regulatory region 498566	1958 bp proximal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	81 bp downstream
Tssr130397	transcription start site region 130397	211 bp downstream
Tssr130398	transcription start site region 130398	158 bp downstream
Tssr130399	transcription start site region 130399	69 bp downstream
Tssr130400	transcription start site region 130400	45 bp downstream
Tssr130401	transcription start site region 130401	37 bp downstream
Tssr130402	transcription start site region 130402	26 bp upstream
Tssr130403	transcription start site region 130403	58 bp upstream
Tssr130404	transcription start site region 130404	98 bp upstream
Tssr130405	transcription start site region 130405	118 bp upstream
Tssr130406	transcription start site region 130406	149 bp upstream
Tssr130407	transcription start site region 130407	183 bp upstream
Tssr130408	transcription start site region 130408	219 bp upstream
Tssr130409	transcription start site region 130409	228 bp upstream
Tssr130410	transcription start site region 130410	249 bp upstream
Tssr130411	transcription start site region 130411	305 bp upstream
Tssr130412	transcription start site region 130412	380 bp upstream
Tssr130413	transcription start site region 130413	633 bp upstream
Tssr130414	transcription start site region 130414	681 bp upstream
Tssr130415	transcription start site region 130415	755 bp upstream
Tssr130416	transcription start site region 130416	1052 bp upstream
Tssr133563	transcription start site region 133563	104 bp upstream
Tssr133564	transcription start site region 133564	73 bp upstream
Tssr133565	transcription start site region 133565	29 bp upstream
Tssr133566	transcription start site region 133566	17 bp upstream
Tssr133567	transcription start site region 133567	221 bp downstream
Tssr133568	transcription start site region 133568	292 bp downstream