rs51383989 SNP Detail

Summary

• ID
  rs51383989
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4267389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGGCAA GGGGAGGGGG
  CTTCAAGCGA CAGAGCCTAG GGAGCTTGGC CACGGCCCCG CCCCCCAGCT TCGGGTGGGG
  AGAGTAGAGG ATGCGCGCAC TCGCTCTCGG TCCAGAGCCG AGAGCGTGCC GAGAGGGCTA
  AGAAAAGAGG CGCGCCTCCG AGGGAGGTGC GGGTGCTGCC TCCCTGTAAT ACCCCAGAAG
  A
  GGCCGATTTC AATGGTCGTG TCTAGCAACC ACAGAACTCG AGAGGCTCAG TGGGGGAATC
  CTTGAAGACC CTCACAGTCC TCTACTCAAG CTCTTGCACC TGCTCCGACA CCCCCCTTCT
  CTAGCACTTG GAGACAGACA CTCTCCTAGA CAAGGGATAG GCTGGGCCTT GGCAACCAGT
  AGGGCGGGAT CATTGTGCCT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss148555658	ENSMUSSNP3917451	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
SNP Consensus Information
SNP					Consensus Type	A/J
rs51383989					SNP	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4267389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20046	CpG island 20046	within coordinates
Gm64374	predicted gene, 64374	1851 bp downstream
Prr36	proline rich 36	within coordinates
Rr658993	regulatory region 658993	within coordinates
Tssr80255	transcription start site region 80255	1378 bp upstream
Tssr80256	transcription start site region 80256	386 bp upstream
Tssr80257	transcription start site region 80257	346 bp upstream
Tssr80258	transcription start site region 80258	263 bp upstream
Tssr80259	transcription start site region 80259	221 bp upstream
Tssr80260	transcription start site region 80260	137 bp upstream
Tssr80261	transcription start site region 80261	88 bp upstream
Tssr80262	transcription start site region 80262	77 bp downstream