rs51384543 SNP Detail

Summary

• ID
  rs51384543
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:156268036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGACACAG TGGGGTGAGG
  CTATTAACAT TCCATGGATG CTCAGTTACA AGAGTCTGAG GATAATTGTT TTCATTGTAG
  AAAAAAGGAC AAAACGGAAT AGTCAGGAAA CAATGAGTCC TCCAAATCAA TAACAGACCC
  CAGGCATAGA ATGCAGTACA GTCCCTACAG GACACAACGT CATCCCAGAG CCAGACAACG
  M
  GAGGCCCCAT CAATAATCCA CTAAGATGAC AGTTACATAC TTGATTTCTC CTTGGCTGCA
  TTTAGTACTC GTGGGATATT CTCTCTGACA AATGAGTGAG CCTTCATTAT CAAACGAATC
  TGTCAAAGCA GAGGGAACAT GAATTTCCTA CCTCTGTCTC CTATAAGTAA CTCCAGAGCT
  ACACAGGCTA ATAGCATTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60329452	NES15835614	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51384543					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60329452	NES15835614	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:156268036 () rs orientation: forward

Symbol	Name	Function Class
Soat1	sterol O-acyltransferase 1	within coordinates
Tssr9565	transcription start site region 9565	752 bp downstream
Tssr14442	transcription start site region 14442	1147 bp upstream
Tssr14443	transcription start site region 14443	916 bp downstream
Tssr14444	transcription start site region 14444	934 bp downstream