rs51385539 SNP Detail

Summary

• ID
  rs51385539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:21923415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTTGTT TGTAGCAGGC
  CTAGGGGCCC GTCCTTGTTG GGGACAGACC TAGAGTGTAA GAGGCAGCTG TGACATTCTC
  TGAACTGGGG CCCGCTTTGA TCTCCTTTCC CTCAGCTGCA CAGGAGGCCC GGAGTAAGTT
  TGAGGAAGTC GAACGGTCCT TGAAAGAGAT GGAAGAGTCC ATCAGGTATG GGCACCAAGG
  Y
  TGTCTCTGCC CCGTCACAGT CACCACCGAC TCCCTCGGGG AGGCGCCAGT CTGGCTCTGC
  TCACCATGCC CCCCTTTACC ACTCAACCTG CTTTTCCAGG AGTTTGGAAC AAGAGATCTC
  CTTTGATTTC GGTCCCTCTG GAGAGTTTGC ATATCTCTAC AGCCAATGCT ACGAGCTCAC
  CACCAATGAG TACATCCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61359699	NES16732011	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51385539					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61359699	NES16732011	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:21923415 () rs orientation: forward

Symbol	Name	Function Class
Prkcsh	protein kinase C substrate 80K-H	within coordinates
Rr194073	regulatory region 194073	1386 bp proximal
Rr199558	regulatory region 199558	1815 bp distal
Rr199559	regulatory region 199559	815 bp distal
Rr208359	regulatory region 208359	586 bp proximal