rs51386132 SNP Detail

Summary

• ID
  rs51386132
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:105291297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCAAACCT CAGGAAGAGA
  ACTCGAGGGA GAGGGAGATG GTGTTAGGGA GGGATGGTTA AATGCCATCT GTGCCCCTCC
  TCTTCGGGTT TGACTGCTTG TCTAATCTAG TTTCAGCTCT CTACCCTGTG CCTTACACTA
  GTCTCACTGT AACTGCTCTG ATGCCAGCTT CTCTATTCTT GTTTCATTAC TCCCCACCCC
  Y
  TCTTGTGGGA TTCACATGTG TATTCAGGAG GAGTCCTTTC CTGGCAGCTG CCGGTTCTGT
  GACTTCATTC CTAGTGTGGA GATGGGGAAG GAAGGAGGAT GTGGCATGTA CCACCTTGTG
  GGGCTTCAAG GATGACAGCC TGCAGGGCAA GCGACAGCAT GGGGTCTGCA TTTATTACTG
  TTTTACAGGA GATGGAGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322370127	CHEV_7_112790604	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51386132					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:105291297 () rs orientation: forward

Symbol	Name	Function Class
Arfip2	ARF interacting protein 2	1674 bp upstream
Cpgi19541	CpG island 19541	869 bp distal
Gm22504	predicted gene, 22504	248 bp downstream
Gm45799	predicted gene 45799	within coordinates
Rr400513	regulatory region 400513	1542 bp downstream
Rr652794	regulatory region 652794	1785 bp distal
Rr652795	regulatory region 652795	1490 bp distal
Timm10b	translocase of inner mitochondrial membrane 10B	within coordinates
Tssr2358	transcription start site region 2358	1669 bp downstream
Tssr68382	transcription start site region 68382	1576 bp downstream
Tssr68383	transcription start site region 68383	1504 bp downstream
Tssr68384	transcription start site region 68384	1281 bp downstream
Tssr68385	transcription start site region 68385	1063 bp downstream
Tssr68386	transcription start site region 68386	1020 bp downstream
Tssr68387	transcription start site region 68387	247 bp upstream
Tssr68388	transcription start site region 68388	525 bp upstream
Tssr74083	transcription start site region 74083	1720 bp upstream