rs51387397 SNP Detail

Summary

• ID
  rs51387397
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:14376246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGGGAGC CTTGGTCTAA
  TATGTTCCGT TGGAACCTGG TTCTTTCCTC TTGTAGGCTA CTGGGTGCAC AGACTGGGGT
  GCAGCAGAAT CTCTTCAGGG ATGTGAATAA GACACAATCT GAAAGAAAAA GGTTTGAAAA
  TGTTTTTTTA AAAGCTCTTA GGGAAATTCA AATTAAACAG ATCATCGTAT AGTACTTGCA
  S
  AGCCTCCTTA GATGGCTGTT AGTGCCATGG TCTGAGAGCA CTGGCGATAC TGTTTCTAAT
  AACCATTCTG CAGGCATCCA ACACTCACCA ACAGTGGGAT GGAGAAGTGC ATTGCTATAA
  TAACCTCTAA CAGAAGACCA TCGAGTGGGG AAGATGGGAA CCAATTTTAT AAATGTGATA
  TCAGGATTTT TCTAATTCAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60691169	NES16234659	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51387397					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60691169	NES16234659	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:14376246 () rs orientation: forward

Symbol	Name	Function Class
Kdm4d	lysine (K)-specific demethylase 4D	within coordinates
Rr674162	regulatory region 674162	1104 bp distal