rs51388088 SNP Detail

Summary

• ID
  rs51388088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74512099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGGAACTCC TCCAGTGGCC
  AGTGACTCAG CAGAGCACGG GTTACATCTG CCTGCTCTAG CAGGTAACTG GCCTTGAACA
  GAAGTGGGTA GAGGTTGTAG GCTATATTGT CCAGGTTCTC CTGGACCAGC TGGGAGTGGG
  ACACTAACGC TTCAGCAGAA ATGAAACGAA GCGACCTCAT CGTGCCCCTG GTCAGAGTGG
  Y
  GCTGTCCCCG ATGTTCTTCC CAAAGTGTGC GAGTGTTGTG GCTATTTATA GCTGCTGCTG
  CTTCTGGACT CAAGCCCAGA AAGTGGTAAA CTGGCCCTTG TGGTCATCTG ACTGCTATTT
  TGGTCCTTAG GTACCAGTTT GGCAGTAACT GTGGAGGCAT CTGTCTGTCT TATGGCACCC
  TGCTGGTGAA AGCAGAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61846848	NES17778969	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51388088					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61846848	NES17778969	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74512099 () rs orientation: forward

Symbol	Name	Function Class
Ccdc127	coiled-coil domain containing 127	within coordinates
Lrrc14b	leucine rich repeat containing 14B	within coordinates
Rr482679	regulatory region 482679	15 bp proximal
Tssr123216	transcription start site region 123216	53 bp upstream
Tssr123217	transcription start site region 123217	32 bp upstream
Tssr123218	transcription start site region 123218	within coordinates
Tssr123219	transcription start site region 123219	13 bp downstream