rs51388178 SNP Detail

Summary

• ID
  rs51388178
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:107457566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACACCTTA CTCTTCAGAA
  CCCCTCCGAC ATAACAACTG CCTCAGAAAA GGATTCTGGC AAGAAAAGAA ATGCTGGGAG
  ACAATGACAT TCTCATATTC TATTTCCAGC AGTTTCATAA TGTAAGATTC AGAACTGTCA
  TCAGAGAGGA CTAGCAAGGG ATCTTAGGTA CTTTTCATAG GACAAAGAAC AATGGTGTTC
  Y
  CCTCTTGTCA CATCCACTAC TTCTTCCTCA TCCATCTTTT ATACTTCTTT TGTTGGTCCT
  ATATTATTCA ATCTTGCTCT TACCATCAAA ATTCTACAGA CCATTAGCTA CACTGACCAT
  GAAATTTGTA TTCATAATAA AGAGAACAGG GTTAAACTTC TCACTGTTCA TTAGCTGTGC
  ATCCTTAGAC AGCCCATCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145102895	ENSMUSSNP5469558	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51388178					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:107457566 () rs orientation: forward

Symbol	Name	Function Class
Rr416649	regulatory region 416649	169 bp distal
Serpinb10	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	within coordinates
Tssr8339	transcription start site region 8339	822 bp downstream
Tssr8340	transcription start site region 8340	778 bp downstream