rs51388996 SNP Detail

Summary

• ID
  rs51388996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:20413721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTATTAAAA ATGTTTGTAA
  ATTTGTTTTG TGTATATGGG TGGTTTGTAC AGAGACAATG GTAGAGAAAG ACTAAATAGG
  GGGAGTTTAC GCAGCAGAGA CATAAACAAG TGAAATTTGT GAATTTTACT TTCAGGTTTC
  CTTGTGATTC AAGGGCCCAT GGCATGTCTC TGGATAAGCA GATTGCCATG GATCGAGGTA
  Y
  TCGGCCCTGA GTGGAGAGAG TGAGGGAATG AAGAACAGAC AAACAGACAA ACAGGCAGGC
  ACAAGGAAAG CTGGGATCAG GTAATCTGAG CGTGGAAGGA AGGAGACGCA CAGCCACGGG
  AGCTCAGCGT GTATATTATC CAGAGGTGAA AAGGAGGTAG GGTTACTCTG AACAGCTGCA
  CTAGGCAGTA GGGTTAATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss63231296	NES17473170	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C		T	C	T	T		C
ss325739982	CHEV_19_20510847	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51388996					SNP	C	C	C	C	C	T	C	C	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63231296	NES17473170	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:20413721 () rs orientation: forward

Symbol	Name	Function Class
D19Mit23	DNA segment, Chr 19, Massachusetts Institute of Technology 23	268 bp distal
Gm32689	predicted gene, 32689	1102 bp upstream
Gm41816	predicted gene, 41816	1397 bp upstream
Rr545031	regulatory region 545031	1526 bp distal
Rr545032	regulatory region 545032	1612 bp distal