rs51389372 SNP Detail

Summary

• ID
  rs51389372
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:32689059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAGA CTCCAAGCAT TTACACCAAG
  T
  GATCACAAAC TGAACCAGAA AAGGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325137916	CHEV_16_32868775	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51389372					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:32689059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8198	CpG island 8198	278 bp distal
Rr323396	regulatory region 323396	1647 bp proximal
Rr325218	regulatory region 325218	within coordinates
Rubcn	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	within coordinates
Tssr140827	transcription start site region 140827	1172 bp upstream
Tssr140828	transcription start site region 140828	409 bp upstream
Tssr140829	transcription start site region 140829	371 bp upstream
Tssr140830	transcription start site region 140830	321 bp upstream
Tssr140831	transcription start site region 140831	1269 bp downstream