rs51391428 SNP Detail

Summary

• ID
  rs51391428
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:14929843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA TCTAGAATCA CCTAGGCAAC
  R
  AACCTCTGGC TACGGCTGCG GGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss146046329	ENSMUSSNP1334603	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss321047002	CHEV_4_14856990	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs51391428					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:14929843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14053	CpG island 14053	within coordinates
Gm11837	predicted gene 11837	65 bp upstream
Gm68732	predicted gene, 68732	within coordinates
Rr589248	regulatory region 589248	within coordinates
Rr589249	regulatory region 589249	19 bp proximal
Rr589250	regulatory region 589250	607 bp proximal
Rr589251	regulatory region 589251	844 bp proximal
Tssr36545	transcription start site region 36545	17 bp upstream
Tssr36546	transcription start site region 36546	776 bp upstream
Tssr36547	transcription start site region 36547	866 bp upstream