rs51393219 SNP Detail

Summary

• ID
  rs51393219
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:33608454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTCACTTTGT AGACCAGGCT AGCCTCAAAC TGAGAAATCC
  GCCTGCCTCT GCCTCCCAAG TGTTGGGATT AAAGGTGTGT GCCAACCACT GCCCAGCGTG
  K
  TCTTCTTCCA CCCTTCAACA CCCCTTTTTT TCCTCCCTTT CAACCCCCCA ATGCTAAATA
  AGAGAGAAAG GAAGGATGGA GGGAAGAGAG GAAAGGGAAG A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss147961122	ENSMUSSNP1025622	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51393219					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:33608454 () rs orientation: forward

Symbol	Name	Function Class
Gm15657	predicted gene 15657	within coordinates
Gm15658	predicted gene 15658	within coordinates
Rr326609	regulatory region 326609	55 bp distal
Tssr140846	transcription start site region 140846	1065 bp upstream
Tssr140847	transcription start site region 140847	952 bp upstream
Tssr140848	transcription start site region 140848	908 bp upstream