rs51394697 SNP Detail

Summary

• ID
  rs51394697
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4214686 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        ACCAT GTCTCTGGCC CAAACTTGAA
  M
  GTTCTCATTT TGTATCAGGT ACTAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss52129277	NES15245615	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs51394697					SNP	A	A	A	A	A	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52129277	NES15245615	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4214686 () rs orientation: reverse

Symbol	Name	Function Class
Akap12	A kinase anchor protein 12	1694 bp upstream
Cpgi1267	CpG island 1267	1616 bp proximal
Cpgi1268	CpG island 1268	891 bp proximal
Gm67397	predicted gene, 67397	794 bp downstream
Gm67407	predicted gene, 67407	616 bp upstream
Rr384063	regulatory region 384063	within coordinates
Rr426944	regulatory region 426944	1204 bp proximal
Tssr3113	transcription start site region 3113	1431 bp upstream
Tssr3114	transcription start site region 3114	1844 bp upstream
Tssr92240	transcription start site region 92240	1637 bp upstream
Tssr92241	transcription start site region 92241	1667 bp upstream