rs51394904 SNP Detail

Summary

• ID
  rs51394904
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:12500811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGTCATG GTGCATCCCT
  GTAACACTAA CATGCTGGAG GCTGAGGCAG AAGGCGAGCC TGGGCTACCG AGACCTGTCT
  CATGTTAGCT GAAGGAGCCT TATATCCAAG ATTCGAATCT CTCAGTTGAC TCATGAGACT
  ATGTCAAGTG ACTGAGCGTG AGACAGCTGC ATTGGTGCAT ATACACACAC TGTTACAGAA
  R
  GGGGGGGGGG GTTCACGAGG GCCCTTCATT CCCTCAGGCT TTATACAACT CATGGCTGAC
  AGAGCAGAAA GAGCTATTTT TTTCAGTGGT ATAGCCATTG GTAAGATGCC CACGCTGCCA
  TAAGTAATCC TAATGAAACC CATTGGGAGT CACACACACA CACACAAGTA AAAGAGAGAC
  TGTGGGAAAA AGTGGGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145184171	ENSMUSSNP3453200	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51394904					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:12500811 () rs orientation: forward

Symbol	Name	Function Class
Gm49962	predicted gene, 49962	1390 bp downstream
Map3k4	mitogen-activated protein kinase kinase kinase 4	within coordinates
Rr392297	regulatory region 392297	1164 bp upstream