rs51395210 SNP Detail

Summary

• ID
  rs51395210
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:74316674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTGCCG TTCCCCAACG
  GAACCTGTCA GTATGCTGTT GACTGGCTAG CTCAGACTCG GCCATCAGGG AGATGCTCAG
  CACCTGACTT CCACAGCCCT GAAGCATTTG TCCATTTCTG AAGTCCAGCC ACCATACAAT
  GCTGGGATCC GGAATTTCAC CAGATTATTT GGAGCTGCCA TTTAGAGTAC CTCCTAGGCA
  S
  GGTGTACCTG GCTACTGTAC CAGGGGTGTT CTGCGAGGCA TCTCTCAGCC CCTGCTCTGC
  AGACAAGTTT CTCATACCTT CCTGTGCCAG GACACTGCCT TAACACCTCA CCTGATCTGC
  TGGACATGGG GTCCAATTCC CACTGCAGAA TTAGAAGCCA AATGTGATGA GACAGGCTTC
  GGCAACTGTC ACCTTGCACC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52661998	NES15473351	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51395210					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52661998	NES15473351	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:74316674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5860	CpG island 5860	1367 bp distal
Exoc3	exocyst complex component 3	933 bp downstream
Rr284943	regulatory region 284943	127 bp proximal
Slc9a3	solute carrier family 9 (sodium/hydrogen exchanger), member 3	within coordinates