rs51395587 SNP Detail

Summary

• ID
  rs51395587
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:16236005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACACGG GGATCGGAAA
  AACATTTTCA GGAGTGGTTC TCTCCTATCA CGTGGGTTCC AGGTATAGAA CTCATGTTGT
  CAGTTTTTGG TGTAAGTGCC CTTATCTGCC CAGCCATTTT GCTGGCCTTG GACTATTTCT
  TAAACTTACT TTGGAGCCAG GCAGTGGTGG CGCATACCTT TAATCCCAGC ACTCGGAGGC
  K
  GAGGCAGGCT GATTTCTGAG TTCGAGGACA GCCTCGGCTA CAGAATGAGG TTTTAAAAAA
  TTTTTAATTT TTGAAACGTA GCCTTGGCTG TCCTGGAACT CATATAGATC AGGCTAGCCT
  CAAACTCACA GAGATCCACC CTCAAGTGCT GAGTTTAAAG GTATGTGCTC CCTCACCCAG
  CCTTCAATTT TTGTAGCAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss134642352	ENSMUSSNP5628761	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs51395587					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:16236005 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12993	CpG island 12993	1040 bp proximal
Gm64384	predicted gene, 64384	681 bp downstream
Rr397612	regulatory region 397612	1143 bp upstream
Rr573789	regulatory region 573789	1455 bp distal
Rr573790	regulatory region 573790	881 bp proximal
Rr573791	regulatory region 573791	1406 bp proximal
Rr573792	regulatory region 573792	1867 bp proximal
Tssr833	transcription start site region 833	1772 bp downstream
Tssr28473	transcription start site region 28473	1336 bp upstream
Tssr28474	transcription start site region 28474	1367 bp upstream
Tssr28475	transcription start site region 28475	1456 bp upstream
Tssr32661	transcription start site region 32661	1801 bp downstream
Tssr32662	transcription start site region 32662	1992 bp downstream
Ythdf3	YTH N6-methyladenosine RNA binding protein 3	1371 bp upstream