rs51396184 SNP Detail

Summary

• ID
  rs51396184
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84571987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCATCCGGG GTTGGCGAAG
  GCCACTCTTA AGTAGCTGCG GCTGAGGGAT CAGTGGTTAC GGTCCCAGCT GCCCCGGGCA
  AGGTGCTGGG TAAAGCACTT TAGAGGCGGT AGCGGGGTGA AATTAGCTGA GCCCCAGTAG
  CTTTTCGCCT TTACGCCTGC AAAACCGGCT TAGAGAAGTC TGTCCGCTCC AGCCAGCTGC
  S
  GTGTCCTCAG GGGATGTCCA GCCAGCGGGA CTGGCTGTTA GGATTGTTAG AAAGGCGCAG
  GCGATGAATG AGCGAGCTGG CAGCTGGCAT AGCTGCGGAG GCGTCCCAAA GCCAGTTTAG
  TTTCTCTGGG TACTTTGAAA GAGGATTTGC GCGGGTGCTG GCCTAATGTG ATTTGAAATT
  TGATTTTTGT TTTCTTCGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60499943	NES16521736	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	G	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51396184					SNP	C	C	C	G	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60499943	NES16521736	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84571987 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	within coordinates
Jam2	junction adhesion molecule 2	within coordinates
Tssr139178	transcription start site region 139178	1444 bp downstream
Tssr139179	transcription start site region 139179	1224 bp downstream
Tssr139180	transcription start site region 139180	1195 bp downstream
Tssr139181	transcription start site region 139181	1006 bp downstream
Tssr139182	transcription start site region 139182	954 bp downstream
Tssr139183	transcription start site region 139183	925 bp downstream
Tssr139184	transcription start site region 139184	902 bp downstream
Tssr139185	transcription start site region 139185	861 bp downstream
Tssr139186	transcription start site region 139186	805 bp downstream
Tssr139187	transcription start site region 139187	785 bp downstream
Tssr139188	transcription start site region 139188	767 bp downstream
Tssr139189	transcription start site region 139189	676 bp downstream
Tssr139190	transcription start site region 139190	660 bp downstream