rs51396990 SNP Detail

Summary

• ID
  rs51396990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:144636907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTGATGGTC AGGGAAAGGC CTTATCTCAA ACAATACAGT
  GGAGAGTGAC TAAGTGTCTG ATGTTATTCT GACCTGGACA CACATGTGTA TGTGCACCTG
  Y
  GAGCACACAC ACACACACAC ACACACACAC ACACACACAC ACACACTCCT AACAATGGTA
  AATTTTGAGT TAGAAATGAA ATACACAAAG GATAAGATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322064326	CHEV_6_144639701	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs51396990					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:144636907 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr400038	regulatory region 400038			1706 bp downstream
Rr640978	regulatory region 640978			1709 bp distal
Sox5	SRY (sex determining region Y)-box 5			Intron
				Noncoding-Transcript-Variant
Sox5os3	SRY (sex determining region Y)-box 5, opposite strand 3			within coordinates