rs51396993 SNP Detail

Summary

• ID
  rs51396993
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:154578427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAA TCTGGTACAG AGGAGGAAGA
  Y
  GCAGGCTCCG GAAAAGGACA GAGTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148038375	ENSMUSSNP4593500	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320570981	CHEV_2_154562243	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51396993					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:154578427 () rs orientation: forward

Symbol	Name	Function Class
Gm57835	predicted gene, 57835	within coordinates
Tssr26967	transcription start site region 26967	1977 bp downstream