rs51397086 SNP Detail

Summary

• ID
  rs51397086
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38335246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCACCCATCG TTAGGATTTC TCTGCACTTG ACTAGTGACA
  TAACCAGCTG TTCTTTTGCC ACCAAACTGC CAATTTGGCT CACTTGTTGT AGGGTTTGTG
  A
  TCTTTTCTTA AGGCAACATG ACAGAGAGGC AACCATTTAG AAGAGGCACG TGTGATCTTC
  CAAAATACAA CTGTTAGTTC CTAGTCTGAA GATTATATG                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss134829320	ENSMUSSNP4677905	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320717655	CHEV_3_38180019	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs51397086					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38335246 () rs orientation: forward

Symbol	Name	Function Class
Rr575652	regulatory region 575652	419 bp distal
Rr575653	regulatory region 575653	554 bp proximal
Rr575654	regulatory region 575654	1689 bp proximal