rs51397899 SNP Detail

Summary

• ID
  rs51397899
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54866427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCATACCA TTAGCTCAGT
  ATTTGGCAGG GGACCCAGAC ATTGGTGTGG CTTTTATTCC ATGGTAGAGG GATAAGAGCC
  AGTTTCTTTA GCTGATGTCT GTCAAGCCTC CGAGTGGTCT TAGTGACTTA TCTGAAATAT
  TTGCTGTGTT GTTTTATACA GCTTATTCTC ACTTTGGGGC CTTTTAGCAA AAATCAAATA
  W
  ATATAGTGTG TTCATCTGTT CATACCTGTT TTATGCATGT TTCTGCTTAA AAAGACATCC
  TTTGTTGCTT GTTTTGTTTT CTAAGAGCTT TTCTGTGTAG CCCAGGCTAG CCTGGAGCTC
  ACAATCCTGC TTCAGTTTTT AAGTCCTGAG ATAACAGCAG GTGTGTGCAG TGTACACAGT
  TGTAGCAGCT CCAACCAACG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61403646	NES16782447	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51397899					SNP	T	T	T	T	T	T	A	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61403646	NES16782447	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54866427 () rs orientation: forward

Symbol	Name	Function Class
Psma4	proteasome subunit alpha 4	1113 bp downstream
Rr204186	regulatory region 204186	1368 bp proximal
Rr209620	regulatory region 209620	1774 bp proximal