rs51398792 SNP Detail

Summary

• ID
  rs51398792
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:153537206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACCAAGAC AGTGCCAGGT
  AGGCCTGGAC AGGCTCCCAG GACAGGAAGC AAGCCAAAGG CGGGAAGAAG CCAACCTGGG
  ACAGCAGGCC CCAGGCAGGA GTGAGCCCAA GACAAATGGC CGCACAGGTG GGCCGGTAGA
  GGAGCTGGCC TGAGATGAAC ACTAATCTGT CGCCCTCCAG GCCTAGAGGG TGGGGACAGA
  Y
  CATGCCCAAG ATGACTCCTG CCCTGTGCCA TATTGCACAA GCAGGGCATA GCACTCCTGA
  GACCTCTCCT GAGACGACCT CAGACCCTGA GCCACCCGGG CACCACTAAG AGGAGCAAGC
  GAGTCGTGGA GAAATGAAAG AGAAGGAGAA GCAGAAGGAA GTGGGCACAG TGGAGAGAGA
  GGTAGTGAGG AACAGCCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136113990	ENSMUSSNP3271055	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51398792					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153537206 () rs orientation: forward

Symbol	Name	Function Class
Gm25757	predicted gene, 25757	277 bp downstream
Rr587767	regulatory region 587767	959 bp distal
Rr587768	regulatory region 587768	816 bp distal
Rr587769	regulatory region 587769	625 bp distal
Rr587770	regulatory region 587770	within coordinates
Rr587771	regulatory region 587771	344 bp distal
Rr587772	regulatory region 587772	241 bp proximal