rs51398839 SNP Detail

Summary

• ID
  rs51398839
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69688794 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAACCCCGGT GCCTTTTAGG AAAAAAAATG GGTGTTCTCT
  TAAGGGGTAG GAATTAGTGT GGAAAAAAGA GAAGTGATCA GGCAGGGTCA TCTCAGGCAC
  Y
  CCCATCTTGG GACCTCTCCT GGGCCCCAGG ATCTAAGAGC TCAGCAACTC CGGAGGTCCC
  TGACAGCCCC GAAGCTCCCA CAGGGTGCAG CACCTGCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132361380	ENSMUSSNP5299434	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss323731576	CHEV_11_69611470	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51398839					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69688794 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3147	CpG island 3147	1972 bp distal
Fgf11	fibroblast growth factor 11	within coordinates
Rr450110	regulatory region 450110	1682 bp distal
Tssr108838	transcription start site region 108838	789 bp upstream
Tssr108839	transcription start site region 108839	585 bp upstream
Tssr108840	transcription start site region 108840	1969 bp downstream