rs51400580 SNP Detail

Summary

• ID
  rs51400580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29298855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATG TTGTCCTTTG ACCTTCCCTA
  R
  TGTTGTCTTG TTCCAGTGTA TGTCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60559218	NES16575500	PERLEGEN	MM_PANEL2	f	SNP	A	G	G	A	G	G	A	A	A	A		A	A	A	A		A
ss325352856	CHEV_17_29216826	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51400580					SNP	A	G	G	A	G	G	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60559218	NES16575500	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29298855 () rs orientation: forward

Symbol	Name	Function Class
Rr392491	regulatory region 392491	within coordinates
Rr524787	regulatory region 524787	901 bp distal
Rr524788	regulatory region 524788	340 bp distal
Rr524789	regulatory region 524789	766 bp proximal
Trp53cor1	tumor protein p53 pathway corepressor 1	755 bp upstream
Tssr143493	transcription start site region 143493	1695 bp upstream
Tssr147171	transcription start site region 147171	1040 bp upstream
Tssr147172	transcription start site region 147172	937 bp upstream
Tssr147173	transcription start site region 147173	909 bp upstream
Tssr147174	transcription start site region 147174	887 bp upstream
Tssr147175	transcription start site region 147175	840 bp upstream
Tssr147176	transcription start site region 147176	806 bp upstream
Tssr147177	transcription start site region 147177	748 bp upstream
Tssr147178	transcription start site region 147178	941 bp downstream