rs51401980 SNP Detail

Summary

• ID
  rs51401980
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:98688579 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGCTATAG AGCCTTCAGC
  TTTAACAACA TTGTCCACTC AAGCTGCCTG CTCTAGAAGA TATGCTCTTG TCTTAGCTGA
  CCAGTAACCA GAGGCCACCA CTGATGAGTA CCACTGAGGA ATCGATGTTT AATTCTACCC
  AGGAAACTGT ATTCTATTAA CTAGGTTGCT CTACATTTGA CTCTAATGGA GTCTGAATGG
  Y
  TTCCTGCGGC TAGCAAGCAC CACCTGAAAC AGCAAGTTAC ACCCAAGATA GACATGTTCA
  GGATGCAAAG GGACCTGAGT TGCCCATGCA TTGCATATCG CTGGCGATAA TGAGGACTAA
  GGATACATAT CGGGGGTTCT CCAAAAATAG ATTAGAACAG CAGCTGAAGC CAGGATCGTT
  TGAGGGTTAG AGAGCCTGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52182035	NES15313922	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51401980					SNP	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52182035	NES15313922	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:98688579 () rs orientation: forward

Symbol	Name	Function Class
Gm34346	predicted gene, 34346	within coordinates
Gm67362	predicted gene, 67362	within coordinates