rs51401994 SNP Detail

Summary

• ID
  rs51401994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79993028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGCGC CAGTTGGGAA GCAGCCCTCG
  Y
  GGCCCGTGGC GGGTGGGGAC TAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61023703	NES16108649	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	T	T	T	C	T		T	C	T		C
ss322281162	CHEV_7_87488166	CHEVERUD	SCREENING_POP	f	SNP											C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs51401994					SNP	T	C	C	C	T	T	T	T	C	T	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61023703	NES16108649	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79993028 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19332	CpG island 19332	within coordinates
Hddc3	HD domain containing 3	within coordinates
Rr400404	regulatory region 400404	36 bp downstream
Rr649873	regulatory region 649873	138 bp distal
Rr649874	regulatory region 649874	192 bp distal
Tssr67435	transcription start site region 67435	134 bp downstream
Tssr67436	transcription start site region 67436	92 bp downstream