rs51402349 SNP Detail

Summary

• ID
  rs51402349
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141150508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACCACGGT GCAGGAGGGA
  CAGCTCCCTG GCACAGGGTA GAGGAGGTGG CAATGACACA CCCAACCTGG GCAACACGGT
  CCATTCCTAC CACATCTCTA CCTCGCCTTC ATCCCAGAGC CAAAAGTCTG GGTCCTGTCG
  TGGCACCTCC ATACTGGGAC TGAGGCTGAG CAGAAAGCCC TGAAGCTGAG TCACAACCAC
  Y
  CTCCACCTCA TGTACCTTAC CCGGAGTCTC AGGGTACCTA GATCATCAGA GGAGCACGGC
  CAGCAGCTAT CCCAGCTCTT AAGCCTGTGC TTAAGGATAT TCTTAAATAT TCTTAGAGGA
  TATTTATCAA CACCTTCCTG CCACCCCCAA GCCTGGCTAG CTCTCCTAAC TCAGGCTGGA
  CACTGGGAAA CCCTGCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363520374	MGP_WTSI_4_140979112	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs51402349					SNP	T	T	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363520374	MGP_WTSI_4_140979112	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141150508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15227	CpG island 15227	1357 bp distal
Gm70191	predicted gene, 70191	1149 bp downstream
Hspb7	heat shock protein family, member 7 (cardiovascular)	within coordinates
Rr100445	regulatory region 100445	within coordinates
Tssr40054	transcription start site region 40054	1521 bp downstream
Tssr40055	transcription start site region 40055	1508 bp downstream
Tssr40056	transcription start site region 40056	1487 bp downstream
Tssr40057	transcription start site region 40057	1426 bp downstream
Tssr40058	transcription start site region 40058	1399 bp downstream
Tssr40059	transcription start site region 40059	1375 bp downstream
Tssr40060	transcription start site region 40060	1315 bp downstream
Tssr40061	transcription start site region 40061	1305 bp downstream
Tssr40062	transcription start site region 40062	674 bp downstream
Tssr40063	transcription start site region 40063	799 bp upstream
Tssr40064	transcription start site region 40064	859 bp upstream
Tssr40065	transcription start site region 40065	874 bp upstream
Tssr40066	transcription start site region 40066	1003 bp upstream
Tssr40067	transcription start site region 40067	1051 bp upstream
Tssr40068	transcription start site region 40068	1103 bp upstream
Tssr40069	transcription start site region 40069	1235 bp upstream
Tssr40070	transcription start site region 40070	1320 bp upstream
Tssr40071	transcription start site region 40071	1344 bp upstream
Tssr40072	transcription start site region 40072	1389 bp upstream
Tssr40073	transcription start site region 40073	1412 bp upstream
Tssr40074	transcription start site region 40074	1437 bp upstream
Tssr40075	transcription start site region 40075	1450 bp upstream
Tssr40076	transcription start site region 40076	1477 bp upstream
Tssr40077	transcription start site region 40077	1496 bp upstream
Tssr44314	transcription start site region 44314	558 bp upstream
Tssr44315	transcription start site region 44315	837 bp downstream
Tssr44316	transcription start site region 44316	920 bp downstream
Tssr44317	transcription start site region 44317	978 bp downstream
Tssr44318	transcription start site region 44318	1361 bp downstream