rs51403269 SNP Detail

Summary

• ID
  rs51403269
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98885774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGTGATTC TCTAGTGGTT
  TCAGGAAACT GCAAAAGGTC TGTGTTTATT GATTGTTATC TGTGAGAGAA AGTGTAGACA
  CCGTCAGAAA ACTCTTCACT ATTCAGATAT TTTCTTCTGT CTTCCGTCAT GGTAGGAAGG
  AGGCAGGAGG ATGGTCTAAG AAGCCACCCC CAGACTCACC CCAGCCTCAT TTCTGCATTA
  Y
  GGGCTCTTGC TGTTAGATAT TTGTCATCTT TGTAAATGTG TAGAGGAAAG TCGGGCAGTG
  GTTCAATCAG TCAGAACCAC TCTGGGCTGG GGATTTAGCT CAGTGATTTC AACAATAGAA
  TCTTTATCTA GCGCGTGCCA AAACCCTGGA CTCGGTCTTC TGCAGGGAAA GAATAAAAGC
  AAACAAAACC AAAACTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61685134	NES17645799	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51403269					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61685134	NES17645799	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98885774 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	893 bp proximal
Rr403444	regulatory region 403444	702 bp upstream
Rr470976	regulatory region 470976	569 bp proximal
Rr470977	regulatory region 470977	895 bp proximal
Tssr114655	transcription start site region 114655	1016 bp upstream
Tssr114656	transcription start site region 114656	1052 bp upstream
Tssr114657	transcription start site region 114657	1105 bp upstream
Tssr114658	transcription start site region 114658	1129 bp upstream
Ttc8	tetratricopeptide repeat domain 8	1059 bp upstream