rs51403902 SNP Detail

Summary

• ID
  rs51403902
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:38781978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAGTTTC CCTTTAGCTA
  TACTGAATAC TAGTGATGCC AAGAAAAACT GCTTCCTGTA CAGAGACTCA AATAAAAGCT
  TTTATTTGTG TACACTCTTT CAAAAATTTA ACATACCTAG GTTTTAGTTT CTTATAAAAT
  ATACTCTTGC TTTGTAAATT ACTTTGTAGT CCAAAGCAGA AGAAATACTA TTACTCAAAG
  Y
  GTGCAGAAAT TCTTTGTGTG AGCCAGGTGA AGGTAGAGCT GAGAAATTAA TGAGCCCCAC
  ACAGTGTTCA CTCAAGGACC AACAGAAAGT AGAAAATGAT ACAGAAGTTT GCTTTTATAA
  ACTCTGATGT TTAGGATAGC AACTGTCACA CACAGTCAAA GGTGGGGTCA CTTAAACCAC
  AGCAATCCAG TTTTGTGCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52235604	NES15208546	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51403902					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52235604	NES15208546	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:38781978 () rs orientation: forward

Symbol	Name	Function Class
Gm66419	predicted gene, 66419	614 bp downstream
Rr429908	regulatory region 429908	1955 bp proximal