rs51404094 SNP Detail

Summary

• ID
  rs51404094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90491638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGTGTCTG GTTTGGACCA
  TTGGGTGGAT GGTAGTGTTC TTTGTGGCAC AGGGGAAGCC TGGTTCATCC ATCTTCAGTC
  TCCATCATGG CCCTCTGGGG ACTTTGCTCA GTTCCTTTTC TGGGTCCCAG TGGCGAGCTG
  TTTCCTGTGT TCACTCCTCA GGGGTTTGAA GGCTCTGTTT TCCAAGCCTG TCCTCCAAGC
  Y
  CTCATTGTTA CTCCTGGGGC TCAGAAGAGA AGTTATTATT TGCTAGTGTA ACCAGTGATG
  TGCTTTCAGG CATAGAGATA AGAGAGGGAT CCCTGACCCT CTGGCTCCTA CCCCCAGTGA
  CTCGTGCTGT CACTCAGCAG CCATGAGCAC ACTGGTAGGC ACCTGGCGTG GGTGAGATCC
  TGTGCTCATG AAGAAGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60424342	NES15923784	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51404094					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424342	NES15923784	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90491638 () rs orientation: forward

Symbol	Name	Function Class
Rr854	regulatory region 854	within coordinates
Rr367471	regulatory region 367471	946 bp upstream
Rr580403	regulatory region 580403	1975 bp distal
Rr580404	regulatory region 580404	1645 bp distal
Rr580405	regulatory region 580405	within coordinates
Rr580406	regulatory region 580406	1508 bp proximal
Rr580407	regulatory region 580407	1863 bp proximal
S100a3	S100 calcium binding protein A3	Intron