rs51404480 SNP Detail

Summary

• ID
  rs51404480
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:45865354 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACGAGTG AATGGATGAA
  GAAAATAAGG TTTTTTTGGG GGGGGAGGCA GAAGAGAATG GCTCATAATA GCTATCTCTG
  CTAGCTCCCC CATCCCCCAG TACCAAGGAT GCAATGAAGC TGTTCCTATG GTTGGCAATG
  GTCTTCTAAG GGCATTGCTA GCCCCAAGAA AAGAGCAGCA AGATGCTCCA TCTCAGGGAT
  Y
  GCCTGTGGGT GGTGTTCTCT CAAACCCTAG TCATGTTGAA GAAAAGCAAG AAGGGAGGGG
  AAAGACTTCA GGGCTAGGGT GGAAACTTCA GTAGTGTCAG GGGCCTCCCC ACCCTGGCTC
  CACTGTGAGG AACTAAACTT CTTTGACTGC TGGGGGCAGC CATCTCCTGT ACCTACCAAA
  GGCCAGTGCA CACCCTGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60259848	NES15755781	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs51404480					SNP	C	C	C	C	C	C	T	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60259848	NES15755781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:45865354 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9193	CpG island 9193	1147 bp proximal
Nfkbie	nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, epsilon	1275 bp upstream
Rr405301	regulatory region 405301	1997 bp downstream
Rr405302	regulatory region 405302	1044 bp upstream
Rr527425	regulatory region 527425	1875 bp distal
Rr527426	regulatory region 527426	1738 bp distal
Rr527427	regulatory region 527427	within coordinates
Rr527428	regulatory region 527428	828 bp proximal
Tssr144787	transcription start site region 144787	1208 bp upstream
Tssr144788	transcription start site region 144788	1265 bp upstream
Tssr144789	transcription start site region 144789	1299 bp upstream
Tssr144790	transcription start site region 144790	1366 bp upstream
Tssr144791	transcription start site region 144791	1377 bp upstream
Tssr144792	transcription start site region 144792	1450 bp upstream
Tssr144793	transcription start site region 144793	1831 bp upstream