rs51405320 SNP Detail

Summary

• ID
  rs51405320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:83924639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCCAATC CTCCATAGTC
  TACACTCTTC ATGAAAGAGA ATGCCTCGGT CAGTGAATGA ATTAAAAATA CATTAATGAT
  AAAGCTGTGG GTTTTGCCTC TATGTTTCTC ATTGTCTCGG CTCTTGCTTT GTTCTGTTGC
  TGGATGAAGT GAGGAGAGTC TTGACTAGCT TAAGTCTATG TGGCAGTGAT GATTAACCTC
  Y
  AGGAACACTA GACAGTTTCT TCTTCATGCT GTTGGCAGTC TATTGGGTGA CACTTGGATC
  CCACAACTGA CAGAGGTCAA CGGACAGACA GACTGCTCAT TCTGGTCGCT CTGTCCTCTG
  GTCACCAGAA TCTGTGGTTA CTGCGGGCTG CCATGGTGGG AAGGAGCACG GTGACTGGCA
  CACTGGCTCT TAGGTCACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52400151	NES15262739	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51405320					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52400151	NES15262739	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:83924639 () rs orientation: forward

Symbol	Name	Function Class
Gm34113	predicted gene, 34113	925 bp upstream
Gm34184	predicted gene, 34184	within coordinates
Rr436092	regulatory region 436092	546 bp distal
Rr436093	regulatory region 436093	560 bp proximal
Rr436094	regulatory region 436094	936 bp proximal