rs51406075 SNP Detail

Summary

• ID
  rs51406075
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:129915761 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTCTTT GTTTCTTTTT
  CCTTAAAAAA ATAAATAAAT AAAAGAAAAG AAAATCTTTA AAGCCGGCAA TCCCAGCCCT
  AAGGAAGCGG AGTCAGGAAA ATCAAGGAAG GCCAAGCGAG GCCATAAAGT TCAAGGCTAA
  CCTGAGACTC AAAAACGCAG TGAGTAGAAC AAAGAAAATA CAAAAACCAC CCCACCCCCA
  Y
  CCCTGGCCAA GAGTTTACCA CGCATCTTTC TTTCCTCGCC TCCTTGTATA CTACGCCCTC
  GACAGCCCTT CCCCCAGCCT GTCTAGGGAA AAGGTCACGT TTCAGAGTCC TCTCCCCGAG
  TGCACCGACC ATGTCCCTGT TCTCAGGAAG TCCGCCCCAC CAGCGGATCC CTTCCCGACC
  GCTCGCTCCG TCTCTTCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss144477356	ENSMUSSNP774525	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss321692409	CHEV_5_130362790	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51406075					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:129915761 () rs orientation: forward

Symbol	Name	Function Class
Chchd2	coiled-coil-helix-coiled-coil-helix domain containing 2	within coordinates
Cpgi16684	CpG island 16684	47 bp proximal
Rr399383	regulatory region 399383	288 bp upstream
Rr621372	regulatory region 621372	within coordinates
Rr621373	regulatory region 621373	540 bp proximal
Tssr53498	transcription start site region 53498	219 bp downstream
Tssr53499	transcription start site region 53499	368 bp downstream
Tssr53500	transcription start site region 53500	496 bp downstream
Tssr53501	transcription start site region 53501	522 bp downstream