rs51406165 SNP Detail

Summary

• ID
  rs51406165
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30255000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGCCAGTGT GGGTTGGGGG GCACATTTAT TGGGGTGGGG
  TTCCTGGGAA GGTCACTGCC GGTCATACAT CTCCCGTAGG ATCTTCATAC TTTCTGAGTA
  R
  CGAAGCTGGT TCCGATGAGA TGCCTCCTTC CACCTAGGAA GGCAGAGGGA GGATTTAGCA
  ACTGCTACAG AGGACACTGG GACAAGCAGC AAGTGAGGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148682401	ENSMUSSNP3095304	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss322135237	CHEV_7_31340594	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs51406165					SNP	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30255000 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18810	CpG island 18810	978 bp distal
Hspb6	heat shock protein, alpha-crystallin-related, B6	132 bp downstream
Lin37	lin-37 DREAM MuvB core complex component	within coordinates
Tssr65782	transcription start site region 65782	781 bp downstream
Tssr65783	transcription start site region 65783	715 bp downstream
Tssr65784	transcription start site region 65784	691 bp downstream
Tssr65785	transcription start site region 65785	636 bp downstream
Tssr65786	transcription start site region 65786	623 bp downstream
Tssr65787	transcription start site region 65787	528 bp downstream
Tssr71789	transcription start site region 71789	887 bp upstream
Tssr71790	transcription start site region 71790	745 bp upstream