rs51406210 SNP Detail

Summary

• ID
  rs51406210
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:128515611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAT AAAAAGCTGG GCATCGTGGT
  C
  TATGCTTTAA TCTCACTCAG CTCTG                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145462145	ENSMUSSNP1251883	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss319965141	CHEV_1_130484451	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51406210					SNP	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:128515611 () rs orientation: forward

Symbol	Name	Function Class
Cxcr4	C-X-C motif chemokine receptor 4	325 bp downstream
Rr12058	regulatory region 12058	11 bp distal
Rr28453	regulatory region 28453	989 bp proximal
Tssr195	transcription start site region 195	933 bp upstream
Tssr13461	transcription start site region 13461	544 bp downstream
Tssr13462	transcription start site region 13462	730 bp downstream
Tssr13463	transcription start site region 13463	826 bp downstream
Tssr13464	transcription start site region 13464	883 bp downstream
Tssr13465	transcription start site region 13465	901 bp downstream
Tssr13466	transcription start site region 13466	966 bp downstream
Tssr13467	transcription start site region 13467	1013 bp downstream
Tssr13468	transcription start site region 13468	1102 bp downstream
Tssr13469	transcription start site region 13469	1155 bp downstream
Tssr13470	transcription start site region 13470	1250 bp downstream
Tssr13471	transcription start site region 13471	1319 bp downstream
Tssr13472	transcription start site region 13472	1388 bp downstream
Tssr13473	transcription start site region 13473	1401 bp downstream
Tssr13474	transcription start site region 13474	1457 bp downstream
Tssr13475	transcription start site region 13475	1481 bp downstream
Tssr13476	transcription start site region 13476	1498 bp downstream
Tssr13477	transcription start site region 13477	1559 bp downstream