rs51406558 SNP Detail

Summary

• ID
  rs51406558
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86579812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTATG GCTTACAAAT ACCTGTGCAT
  C
  TAGCTCCAGG GGATGTGACG CCCTC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss136760263	ENSMUSSNP1190526	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs51406558					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86579812 () rs orientation: forward

Symbol	Name	Function Class
A330041J22Rik	RIKEN cDNA A330041J22 gene	within coordinates
Cpgi22104	CpG island 22104	1390 bp distal
Gm55057	predicted gene, 55057	1284 bp downstream
Me1	malic enzyme 1, NADP(+)-dependent, cytosolic	1845 bp upstream
Rr205233	regulatory region 205233	619 bp distal
Rr206830	regulatory region 206830	1211 bp distal
Rr211051	regulatory region 211051	790 bp proximal
Tssr90788	transcription start site region 90788	1970 bp upstream
Tssr90789	transcription start site region 90789	1905 bp upstream
Tssr90790	transcription start site region 90790	1801 bp upstream