rs51406565 SNP Detail

Summary

• ID
  rs51406565
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45112039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCAGACCAG GCTTGTATGC
  ATGACAGGGA GGACAAAGGC TCAGCCTGTA GGGTGCTTGC CTAGAGCGCA CAAGGCCTGG
  GGTCTGTCTA TCCCATTAGC TCCTACACTG ACATGTGGAA GCAGGAGCTC AAATGGTCAA
  GGGCATCTTC AGCTACAGAG TGAGTCTGAA GACAGCCTGA GATACAGGAG GCCATCTCAC
  K
  ATGTAAATAA ATAAACGAGA AACACAACAA GATGGTCGTC AAAGGATCAC CCAGTGCATG
  TGAGAGATTC CAGAAAGGAA GGGAGCAATC AAGTCAGGCC ATGGAAGTCA GTGGGTACCA
  GAGGCACTAA GATAGTAGAT CTAAGGATAC CTAGCTTAGA TCATTGTCTG AATGCCCGGG
  GGCACCTCTG TGCTGACCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	WSB/EiJ
ss61003426	NES16114094	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	T	G	T
ss149135557	ENSMUSSNP7237558	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	WSB/EiJ
rs51406565					SNP	G	T	G	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61003426	NES16114094	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45112039 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	Intron
Gm73429	predicted gene, 73429	1152 bp upstream
Gm73431	predicted gene, 73431	965 bp downstream
Rr380754	regulatory region 380754	1183 bp downstream
Rr646452	regulatory region 646452	1596 bp distal
Rr646453	regulatory region 646453	1163 bp distal
Rr646454	regulatory region 646454	666 bp distal
Rr646455	regulatory region 646455	424 bp proximal
Tssr66542	transcription start site region 66542	1515 bp downstream
Tssr72399	transcription start site region 72399	1669 bp upstream
Tssr72400	transcription start site region 72400	1638 bp upstream