rs51406673 SNP Detail

Summary

• ID
  rs51406673
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129227665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AACAT TACAACCCTT CTGCCCCACC
  W
  CCCACCAAGC TCTAAAACCT CACAC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147438491	ENSMUSSNP5767799	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321312026	CHEV_4_129011116	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51406673					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129227665 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14889	CpG island 14889	734 bp proximal
Rbbp4	retinoblastoma binding protein 4, chromatin remodeling factor	within coordinates
Rr367701	regulatory region 367701	1487 bp upstream
Rr367702	regulatory region 367702	1935 bp upstream
Rr600200	regulatory region 600200	1449 bp proximal
Rr600201	regulatory region 600201	1488 bp proximal
Tssr39141	transcription start site region 39141	1721 bp upstream
Tssr43492	transcription start site region 43492	1371 bp downstream
Tssr43493	transcription start site region 43493	1425 bp downstream
Tssr43494	transcription start site region 43494	1452 bp downstream
Zbtb8os	zinc finger and BTB domain containing 8 opposite strand	1660 bp upstream