rs51407257 SNP Detail

Summary

• ID
  rs51407257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:153060230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAATAAAGC TGTTTGAGGA GAGAACCTGG
  TATCTCAAGC AATCTGTCCC TAAGGAAGGG GAAAGTGCGA AAATGAGCCA ACACAGAACT
  TCTGACTTTG TGTTTGGATG GACTGCTTGG GTACAAAGTC TGCTGTTGAA CCTGACTTTA
  Y
  GAAACAATTG ATGGCATCCT ATAGATTTGG TTTTGTTATG TAATACCAAC ACACATGTAT
  GTATTTAATT ATAGCCAAGA GGAAAATTGC TGTACTGAAA AAAAATATac atatacatac
  acacacacac acacacacac acacacacac                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss60822423	NES16493740	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T		T	C
ss320071217	CHEV_1_155031614	CHEVERUD	SCREENING_POP	f	SNP								T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs51407257					SNP	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60822423	NES16493740	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153060230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi864	CpG island 864	1286 bp proximal
Lamc2	laminin, gamma 2	within coordinates
Rr28719	regulatory region 28719	370 bp proximal
Tssr14250	transcription start site region 14250	1527 bp downstream
Tssr14251	transcription start site region 14251	1587 bp downstream
Tssr14252	transcription start site region 14252	1618 bp downstream
Tssr14253	transcription start site region 14253	1641 bp downstream
Tssr14254	transcription start site region 14254	1658 bp downstream