rs51407440 SNP Detail

Summary

• ID
  rs51407440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151350346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCACCCTG GGATTCTGAC
  TGCAAAAAGT CAGCTGTTCA CACCATTACA GAAGTGAGCG TTTAGCTAGC AAAAATCATA
  GTGAGAAAGA AAGAAAAAGC CTCAGGAGAC CTCCCTCTCA ACTTCAGTGA CTCCACATTC
  TTTACTTGGG TGTGGGGTGA AGAGAGTCTC TCTTCTTTGT CTGTGTTAAA ATAAATACAG
  Y
  AATAAAGTGC AGGAGACCCC AGCATACCCT GGACAGTGAG GCATCTTGGT CCTGAAAGGG
  AAAGCCTGGG GAGAAGAAAA TGAAGAACAG GCCAAATCCC CCTTACAATG ACACCTTTAG
  AATGTAGACA GGACAGCCAC CAAGGCTGAC TCTTAGCTCC CACACAGGAG GGAACACCTC
  TCATGGGAGT ATGTACTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss144728477	ENSMUSSNP1331338	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51407440					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151350346 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	within coordinates
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	within coordinates
Rr117371	regulatory region 117371	55 bp proximal
Tssr54686	transcription start site region 54686	1269 bp downstream
Tssr54687	transcription start site region 54687	1291 bp downstream