rs51408127 SNP Detail

Summary

• ID
  rs51408127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:127704602 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTTTTGGCA GCTTAAAGGT GGTTTTAAAT
  ACTGTATCAG TAGCATAGCC TCAGTAGTAC TTCCCACACA CCTGATCCTT CAGTGATGAT
  CTCAGATTGA ACATCGGTCA TGTTTAAATT CATATTTTCT TGCATTCTTG AGAATTTTTT
  Y
  CTCAGATTAT AATCAAGTGT CATTTTTTAA AAACCCTCAA GTATCATTTG ATAAATTAAA
  CCCAACAGAG TAAGAAGCTG AGATGCCAGA ACAAACTGTA AGGTCTTAAA CTGTCATGCA
  TCCATGATGC TAAGGTATCC TTCAGTATTC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss60798932	NES16471903	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T		T	T	T		C
ss319963737	CHEV_1_129673442	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs51408127					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60798932	NES16471903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:127704602 () rs orientation: forward

Symbol	Name	Function Class
Ccnt2	cyclin T2	Intron
Cpgi690	CpG island 690	1928 bp distal
Rr417685	regulatory region 417685	1818 bp distal