rs51408521 SNP Detail

Summary

• ID
  rs51408521
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148371464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCTC CTAGGAGAGT TGGGAAAAGT
  T
  CTCCCAGCGG CAGGGCTAGC TCTCG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148000203	ENSMUSSNP2793386	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321418874	CHEV_4_147661116	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs51408521					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148371464 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15301	CpG island 15301	within coordinates
Disp3	dispatched RND transporter family member 3	within coordinates
Gm68159	predicted gene, 68159	1260 bp upstream
Rr604639	regulatory region 604639	within coordinates
Rr604640	regulatory region 604640	948 bp proximal
Rr604641	regulatory region 604641	1147 bp proximal
Rr604642	regulatory region 604642	1271 bp proximal
Rr604643	regulatory region 604643	1290 bp proximal
Rr604644	regulatory region 604644	1404 bp proximal
Rr604645	regulatory region 604645	1570 bp proximal
Tssr44603	transcription start site region 44603	920 bp downstream