rs51408690 SNP Detail

Summary

• ID
  rs51408690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:8760485 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTGAAT TGGAGAGTCA
  GGAGTGAATG ACCTTGATAT GGTAATTGTA GACAGACAAC TGGGGAGCAG GGATTTGAAC
  CAGGCTAACT AACTTCAAAG CCCAAGACTT TAACCACTAT GGAGAAAACT AAACACTGTA
  TCGTGCCCAA AGAGGCACTG CTAAAACCCT GGGGAGCAGG GATTTGAACC AGACTAACTC
  R
  CTCCAAAGCC CAAGACCTTA ACCACTATGA AGAAAACTAT ATCGTTCCTA AAGAGACACG
  GCTAACACCA GAGACACGGC TAACACCCTA TCCATCCAAG GTAAAATTTC ATCCTCAGTA
  GAACTACTTT CCAGAACTAA GATAAATCCA TAGGCAGTTT TAACCACTGG CCAGTTCAAA
  ACCTCTTTTG GGGGGGTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss146767811	ENSMUSSNP6074553	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss323245666	CHEV_10_8604539	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs51408690					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8760485 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1286	CpG island 1286	888 bp proximal
Gm26674	predicted gene, 26674	within coordinates
Rr427411	regulatory region 427411	545 bp distal
Rr427412	regulatory region 427412	1319 bp proximal
Sash1	SAM and SH3 domain containing 1	within coordinates
Tssr92336	transcription start site region 92336	643 bp downstream
Tssr96654	transcription start site region 96654	920 bp downstream
Tssr96655	transcription start site region 96655	1127 bp downstream
Tssr96656	transcription start site region 96656	1154 bp downstream
Tssr96657	transcription start site region 96657	1274 bp downstream
Tssr96658	transcription start site region 96658	1292 bp downstream
Tssr96659	transcription start site region 96659	1351 bp downstream
Tssr96660	transcription start site region 96660	1375 bp downstream
Tssr96661	transcription start site region 96661	1460 bp downstream
Tssr96662	transcription start site region 96662	1490 bp downstream
Tssr96663	transcription start site region 96663	1784 bp downstream
Tssr96664	transcription start site region 96664	1848 bp downstream