rs51411664 SNP Detail

Summary

• ID
  rs51411664
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:82945932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCAGTGTC ACCTACTCAG
  CTCTTAATAT GCAGAAGGGC ATCAAGAGAA ACTGGAAAAC AGGGACCAAA GTGAACTCTA
  AGGAAAAACT GAAATAAAAA TGAAATGTAA ATACACCTGC CCAGGACATT TGGAGTTTGC
  AGGGTAAATG TTAAGTTCCC TAAATTGGCT CTGTTTTCTA TCTATCTGGG TACCCTTAAA
  R
  CCAGACAGGG AGGTTCACAC CTGTAATCTC GGCACATAGG AGATTGAGGC AAGGCTAAAC
  CAGCACGGGC TATGTGGTTC CAGGCCAGGC TAGGTTACTG AGTCAAATCT TATCTCAAAA
  AAGAGCCCAA AATAAAGAAA AAAATTGTAA TTGTCTTTAA TCAAAATTTT ACCCAAATTT
  ACTAAATTTT CTCTGGGATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60904300	NES15955699	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs51411664					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60904300	NES15955699	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:82945932 () rs orientation: forward

Symbol	Name	Function Class
D6UmiJ16	DNA segment, Chr 6, University of Michigan Jones 16	489 bp distal
M1ap	meiosis 1 associated protein	within coordinates
Rr632712	regulatory region 632712	403 bp proximal
Rr632713	regulatory region 632713	1989 bp proximal