rs51413422 SNP Detail

Summary

• ID
  rs51413422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  128
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:39767269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGCTGCTT CTCAGAGATA
  GGAAACAGGG GTGATGGTAA CAGCCTGAAT TCCCGCTCAT AAGCCTGGAG CAGCTTTGGA
  GTTTTAAAAA AGGGCTAGAA TCCCAAGGAT AAAAGGGCAG AAAAGCTCCT TAGCTCAATC
  CTGTTTATTC TTCATCTAAG CGCACCCTTT GATGTAGACA CAGACATTTC TTCCAGTGGG
  R
  AAGAAAAGAA AAGAAGAAAG GCCACAGGCT TAATTTTGTA ATGGTAATTA CTGTGTAAAG
  TAAAAAGAGC AAAAAGACTT TCAGTCCATC AGGGTAAAAC ATGCCATCTG AAGCATGTGT
  TGACTCTATT TATAGATTGC GTGAGGGTCT CCATCTTATG TGCCCTACAC AGAAAGCAGC
  TATGAGAATT TAAACAGGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134853017	ENSMUSSNP2234170	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs51413422					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:39767269 () rs orientation: forward

Symbol	Name	Function Class
Gm46834	predicted gene, 46834	110 bp upstream
Rr575767	regulatory region 575767	within coordinates
Rr575768	regulatory region 575768	121 bp proximal
Rr575769	regulatory region 575769	996 bp proximal